thanks guys. I did end up taking it to the shop. I ran it for 4 or 5 hours on Saturday out of the water and not in gear. It seemed to be getting better with every change of plugs, but then I went fishing with it sat night and it was doing the same thing. I checked spark, jetting, cleaned the carbs with some spray, and nothign seemed to matter. With gas at over $4 a gallon here I figured I should just take it somewhere and get it fixed right. it is not worth trailering the boat to lakes and not have my trolling motor working. I'll let you know what the problem was and how much they take me for then I get it back.
Thanks again for the advice.