Is it possible this caused reverse polarity?
hmm..... not sure why the R&R went then, I'll have to do some research.
check the connector pins real close, Merc's have a bad habit of over heating the pin connectors and then damaging other parts, check the wires from the stator closely as well, if they look at all burned/overheated, cut them back and put on new connectors.. check your grounds, bad or loose grounds also cause these same weird problems..
I would ditch those slip fit connectors for hard wiring and shrink tube... Too much resistance in those style connectors if they aren't perfect.